스플라이싱 인자 3B 서브유닛 1 은 SF3B1 [5] [6] 유전자에 의해 인체 내에서 부호화되는 단백질 이다.
기능. 이 유전자는 스플라이싱 인자 3b 단백질 복합체의 서브유닛 1을 코드한다. 스플라이싱 인자 3a 및 12S RNA 단위와 함께 스플라이싱 인자 3b가 U2 소핵 리보핵단백질 복합체(U2 snRNP)를 형성한다. 스플라이싱 인자 3b/3a 복합체는 인트론 분기 부위의 pre-mRNA 상류에 배열 독립적인 방식으로 결합하고 U2 snRNP를 pre-mRNA에 고정할 수 있다. 스플라이싱 인자 3b도 마이너 U12형 스플라이싱 소좀의 구성요소이다. 서브유닛 1의 카르복시 말단 3분의 2는 막대 모양의 나선 구조를 형성하는 22개의 동일하지 않은 탠덤 HEAT 반복을 가지고 있다. 대체 스플라이싱으로 인해 여러 개의 트랜스크립트 배리언트가 서로 다른 [6] Isoform을 인코딩합니다.
상호 작용 SF3B1은 다음과 상호작용하는 것으로 나타났습니다 .
임상 관련성 이 유전자의 돌연변이는 진행성 만성 림프구 백혈병,[12] 골수 이형성 증후군[13] 및 유방암 의 [14] 경우에 동시에 나타났다. SF3B1 돌연변이는 환시데로아세포(RARS; 골수이형성증후군) 또는 혈소판증(RARS-T; 골수이형성증후군/골수이형성신생물)을 가진 난치성 빈혈 환자의 60%~80%에서 발견된다. 또한 SF3B1 돌연변이가 안와 흑색종에 관여하는 것을 암시하는 새로운 증거들이 있다.
레퍼런스 ^ a b c GRCh38: 앙상블 릴리즈 89: ENSG00000115524 - 앙상블 , 2017년 5월 ^ a b c GRCm38: 앙상블 릴리즈 89: ENSMUSG000025982 - 앙상블 , 2017년 5월 ^ "Human PubMed Reference:" . National Center for Biotechnology Information, U.S. National Library of Medicine . ^ "Mouse PubMed Reference:" . National Center for Biotechnology Information, U.S. National Library of Medicine . ^ Wang C, Chua K, Seghezzi W, Lees E, Gozani O, Reed R (May 1998). "Phosphorylation of spliceosomal protein SAP 155 coupled with splicing catalysis" . Genes & Development . 12 (10): 1409–14. doi :10.1101/gad.12.10.1409 . PMC 316838 . PMID 9585501 . ^ a b "Entrez Gene: SF3B1 splicing factor 3b, subunit 1, 155kDa" . ^ Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry" . The EMBO Journal . 19 (23): 6569–81. doi :10.1093/emboj/19.23.6569 . PMC 305846 . PMID 11101529 . ^ a b c d Will CL, Urlaub H, Achsel T, Gentzel M, Wilm M, Lührmann R (September 2002). "Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein" . The EMBO Journal . 21 (18): 4978–88. doi :10.1093/emboj/cdf480 . PMC 126279 . PMID 12234937 . ^ Boudrez A, Beullens M, Waelkens E, Stalmans W, Bollen M (August 2002). "Phosphorylation-dependent interaction between the splicing factors SAP155 and NIPP1" . The Journal of Biological Chemistry . 277 (35): 31834–41. doi :10.1074/jbc.M204427200 . PMID 12105215 . ^ a b Das BK, Xia L, Palandjian L, Gozani O, Chyung Y, Reed R (October 1999). "Characterization of a protein complex containing spliceosomal proteins SAPs 49, 130, 145, and 155" . Molecular and Cellular Biology . 19 (10): 6796–802. doi :10.1128/mcb.19.10.6796 . PMC 84676 . PMID 10490618 . ^ Will CL, Schneider C, MacMillan AM, Katopodis NF, Neubauer G, Wilm M, Lührmann R, Query CC (August 2001). "A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site" . The EMBO Journal . 20 (16): 4536–46. doi :10.1093/emboj/20.16.4536 . PMC 125580 . PMID 11500380 . ^ Quesada V, Conde L, Villamor N, Ordóñez GR, Jares P, Bassaganyas L, Ramsay AJ, Beà S, Pinyol M, Martínez-Trillos A, López-Guerra M, Colomer D, Navarro A, Baumann T, Aymerich M, Rozman M, Delgado J, Giné E, Hernández JM, González-Díaz M, Puente DA, Velasco G, Freije JM, Tubío JM, Royo R, Gelpí JL, Orozco M, Pisano DG, Zamora J, Vázquez M, Valencia A, Himmelbauer H, Bayés M, Heath S, Gut M, Gut I, Estivill X, López-Guillermo A, Puente XS, Campo E, López-Otín C (January 2012). "Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia". Nature Genetics . 44 (1): 47–52. doi :10.1038/ng.1032 . PMID 22158541 . S2CID 205343043 . ^ Malcovati L, Papaemmanuil E, Bowen DT, Boultwood J, Della Porta MG, Pascutto C, Travaglino E, Groves MJ, Godfrey AL, Ambaglio I, Gallì A, Da Vià MC, Conte S, Tauro S, Keenan N, Hyslop A, Hinton J, Mudie LJ, Wainscoat JS, Futreal PA, Stratton MR, Campbell PJ, Hellström-Lindberg E, Cazzola M (December 2011). "Clinical significance of SF3B1 mutations in myelodysplastic syndromes and myelodysplastic/myeloproliferative neoplasms" . Blood . 118 (24): 6239–46. doi :10.1182/blood-2011-09-377275 . PMC 3236114 . PMID 21998214 . ^ Koboldt, Daniel C.; Fulton, Robert S.; McLellan, Michael D.; Schmidt, Heather; Kalicki-Veizer, Joelle; McMichael, Joshua F.; Fulton, Lucinda L.; Dooling, David J.; Ding, Li; Mardis, Elaine R.; Wilson, Richard K.; Ally, Adrian; Balasundaram, Miruna; Butterfield, Yaron S. N.; Carlsen, Rebecca; Carter, Candace; Chu, Andy; Chuah, Eric; Chun, Hye-Jung E.; Coope, Robin J. N.; Dhalla, Noreen; Guin, Ranabir; Hirst, Carrie; Hirst, Martin; Holt, Robert A.; Lee, Darlene; Li, Haiyan I.; Mayo, Michael; Moore, Richard A.; et al. (October 2012). "Comprehensive molecular portraits of human breast tumours" . Nature . 490 (7418): 61–70. Bibcode :2012Natur.490...61T . doi :10.1038/nature11412 . PMC 3465532 . PMID 23000897 .
추가 정보 Andersson B, Wentland MA, Ricafrente JY, Liu W, Gibbs RA (April 1996). "A "double adaptor" method for improved shotgun library construction". Analytical Biochemistry . 236 (1): 107–13. doi :10.1006/abio.1996.0138 . PMID 8619474 . Yu W, Andersson B, Worley KC, Muzny DM, Ding Y, Liu W, Ricafrente JY, Wentland MA, Lennon G, Gibbs RA (April 1997). "Large-scale concatenation cDNA sequencing" . Genome Research . 7 (4): 353–8. doi :10.1101/gr.7.4.353 . PMC 139146 . PMID 9110174 . Gozani O, Potashkin J , Reed R (August 1998). "A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site" . Molecular and Cellular Biology . 18 (8): 4752–60. doi :10.1128/mcb.18.8.4752 . PMC 109061 . PMID 9671485 . Das BK, Xia L, Palandjian L, Gozani O, Chyung Y, Reed R (October 1999). "Characterization of a protein complex containing spliceosomal proteins SAPs 49, 130, 145, and 155" . Molecular and Cellular Biology . 19 (10): 6796–802. doi :10.1128/mcb.19.10.6796 . PMC 84676 . PMID 10490618 . Pauling MH, McPheeters DS, Ares M (March 2000). "Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA" . Molecular and Cellular Biology . 20 (6): 2176–85. doi :10.1128/MCB.20.6.2176-2185.2000 . PMC 110834 . PMID 10688664 . Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, de Oliveira PS, Bucher P, Jongeneel CV, O'Hare MJ, Soares F, Brentani RR, Reis LF, de Souza SJ, Simpson AJ (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags" . Proceedings of the National Academy of Sciences of the United States of America . 97 (7): 3491–6. Bibcode :2000PNAS...97.3491D . doi :10.1073/pnas.97.7.3491 . PMC 16267 . PMID 10737800 . Das R, Zhou Z, Reed R (May 2000). "Functional association of U2 snRNP with the ATP-independent spliceosomal complex E" . Molecular Cell . 5 (5): 779–87. doi :10.1016/S1097-2765(00)80318-4 . PMID 10882114 . Brand M, Moggs JG, Oulad-Abdelghani M, Lejeune F, Dilworth FJ, Stevenin J, Almouzni G, Tora L (June 2001). "UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation" . The EMBO Journal . 20 (12): 3187–96. doi :10.1093/emboj/20.12.3187 . PMC 150203 . PMID 11406595 . Will CL, Schneider C, MacMillan AM, Katopodis NF, Neubauer G, Wilm M, Lührmann R, Query CC (August 2001). "A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site" . The EMBO Journal . 20 (16): 4536–46. doi :10.1093/emboj/20.16.4536 . PMC 125580 . PMID 11500380 . Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ (April 2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis" . RNA . 8 (4): 426–39. doi :10.1017/S1355838202021088 . PMC 1370266 . PMID 11991638 . Boudrez A, Beullens M, Waelkens E, Stalmans W, Bollen M (August 2002). "Phosphorylation-dependent interaction between the splicing factors SAP155 and NIPP1" . The Journal of Biological Chemistry . 277 (35): 31834–41. doi :10.1074/jbc.M204427200 . PMID 12105215 . Will CL, Urlaub H, Achsel T, Gentzel M, Wilm M, Lührmann R (September 2002). "Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein" . The EMBO Journal . 21 (18): 4978–88. doi :10.1093/emboj/cdf480 . PMC 126279 . PMID 12234937 . Golas MM, Sander B, Will CL, Lührmann R, Stark H (May 2003). "Molecular architecture of the multiprotein splicing factor SF3b". Science . 300 (5621): 980–4. Bibcode :2003Sci...300..980G . doi :10.1126/science.1084155 . PMID 12738865 . S2CID 31046270 . Banerjee H, Rahn A, Gawande B, Guth S, Valcarcel J, Singh R (February 2004). "The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF 65) is essential in vivo but dispensable for activity in vitro" . RNA . 10 (2): 240–53. doi :10.1261/rna.5153204 . PMC 1370536 . PMID 14730023 . Will CL, Schneider C, Hossbach M, Urlaub H, Rauhut R, Elbashir S, Tuschl T, Lührmann R (June 2004). "The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome" . RNA . 10 (6): 929–41. doi :10.1261/rna.7320604 . PMC 1370585 . PMID 15146077 . Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (August 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins" . Proceedings of the National Academy of Sciences of the United States of America . 101 (33): 12130–5. Bibcode :2004PNAS..10112130B . doi :10.1073/pnas.0404720101 . PMC 514446 . PMID 15302935 . Lin KT, Lu RM, Tarn WY (October 2004). "The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo" . Molecular and Cellular Biology . 24 (20): 9176–85. doi :10.1128/MCB.24.20.9176-9185.2004 . PMC 517884 . PMID 15456888 .
PDB 갤러리
2f9d : SF3b155 영역에 결합하는 스플라이소좀 단백질 p14의 2.5앙스트롬 분해 구조
2f9j : SF3b155 영역에 결합된 스플라이소좀 단백질 p14의 Y22M 돌연변이의 3.0 앙스트롬 분해 구조
2fho : 인간 스플라이소좀 단백질 복합체 p14-SF3b155의 NMR 용액 구조